IL_7NBU_183

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NBU_183 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0964

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7NBU|1|a|U|1851
7NBU|1|a|U|1852
7NBU|1|a|A|1853
7NBU|1|a|A|1854
7NBU|1|a|U|1855
7NBU|1|a|U|1856
7NBU|1|a|G|1857
7NBU|1|a|A|1858
7NBU|1|a|U|1859
7NBU|1|a|G|1860
*
7NBU|1|a|U|1882
7NBU|1|a|U|1883
7NBU|1|a|G|1884
7NBU|1|a|A|1885
7NBU|1|a|U|1886
7NBU|1|a|C|1887
7NBU|1|a|G|1888
7NBU|1|a|A|1889
7NBU|1|a|A|1890
7NBU|1|a|G|1891

Current chains

Chain a

23S ribosomal RNA

Nearby chains