IL_7NFX_002

3D structure

PDB id

7NFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NFX_002 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.1911

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

7NFX|1|1|G|55
7NFX|1|1|A|56
7NFX|1|1|G|57
*
7NFX|1|1|C|290
7NFX|1|1|C|291

Current chains

Chain 1

SRP RNA 7SL

Nearby chains

Chain t

Signal recognition particle 14 kDa protein

Chain w

Signal recognition particle 9 kDa protein