IL_7NFX_038

3D structure

PDB id

7NFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUCC*GGC

Length

8 nucleotides

Bulged bases

7NFX|1|5|C|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NFX_038 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.3952

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

7NFX|1|5|G|482
7NFX|1|5|G|483
7NFX|1|5|U|484
7NFX|1|5|C|485
7NFX|1|5|C|486
*
7NFX|1|5|G|670
7NFX|1|5|G|671
7NFX|1|5|C|672

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain r

eL28