IL_7NFX_111

3D structure

PDB id

7NFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

7NFX|1|5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NFX_111 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.0997

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7NFX|1|5|C|2867
7NFX|1|5|G|2868
7NFX|1|5|U|2869
7NFX|1|5|A|2870
7NFX|1|5|A|2871
7NFX|1|5|C|2872
*
7NFX|1|5|G|2877
7NFX|1|5|G|2878
7NFX|1|5|A|2879
7NFX|1|5|U|2880
7NFX|1|5|A|2881
7NFX|1|5|A|2882
7NFX|1|5|G|2883

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain n

60s ribosomal protein l41

Chain p

eL43