IL_7NFX_123

3D structure

PDB id

7NFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

7NFX|1|5|A|3785, 7NFX|1|5|C|3791

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NFX_123 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.1812

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7NFX|1|5|C|3781
7NFX|1|5|C|3782
7NFX|1|5|A|3783
7NFX|1|5|A|3784
7NFX|1|5|A|3785
7NFX|1|5|U|3786
7NFX|1|5|G|3787
7NFX|1|5|C|3788
7NFX|1|5|C|3789
7NFX|1|5|U|3790
7NFX|1|5|C|3791
7NFX|1|5|G|3792
*
7NFX|1|5|C|3808
7NFX|1|5|G|3809
7NFX|1|5|C|3810
7NFX|1|5|G|3811

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain n

60s ribosomal protein l41