IL_7NFX_150

3D structure

PDB id

7NFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

7NFX|1|5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NFX_150 not in the Motif Atlas

Geometric match to IL_5AOX_003

Geometric discrepancy: 0.2782

The information below is about IL_5AOX_003

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

7NFX|1|5|C|4582
7NFX|1|5|C|4583
7NFX|1|5|A|4584
7NFX|1|5|U|4585
*
7NFX|1|5|A|4717
7NFX|1|5|G|4718
7NFX|1|5|G|4719
7NFX|1|5|C|4720
7NFX|1|5|G|4721

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain O

uL13