IL_7NFX_154

3D structure

PDB id

7NFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

7NFX|1|5|U|4634, 7NFX|1|5|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NFX_154 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.265

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

7NFX|1|5|U|4632
7NFX|1|5|G|4633
7NFX|1|5|U|4634
7NFX|1|5|A|4635
7NFX|1|5|U|4636
7NFX|1|5|G|4637
*
7NFX|1|5|C|4662
7NFX|1|5|G|4663
7NFX|1|5|A|4664
7NFX|1|5|A|4665
7NFX|1|5|G|4666

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain W

Ribosomal protein L24

Chain d

eL31