IL_7NFX_191

3D structure

PDB id

7NFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGGG*CACA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NFX_191 not in the Motif Atlas

Geometric match to IL_5J7L_283

Geometric discrepancy: 0.2254

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7NFX|1|5|U|4991
7NFX|1|5|G|4992
7NFX|1|5|G|4993
7NFX|1|5|G|4994
*
7NFX|1|5|C|5057
7NFX|1|5|A|5058
7NFX|1|5|C|5059
7NFX|1|5|A|5060

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain d

eL31

Chain z

Signal recognition particle subunit SRP72