IL_7NFX_192

3D structure

PDB id

7NFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGG*CUCG

Length

7 nucleotides

Bulged bases

7NFX|1|5|C|5054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NFX_192 not in the Motif Atlas

Geometric match to IL_7A0S_112

Geometric discrepancy: 0.3082

The information below is about IL_7A0S_112

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

7NFX|1|5|C|4996
7NFX|1|5|G|4997
7NFX|1|5|G|4998
*
7NFX|1|5|C|5052
7NFX|1|5|U|5053
7NFX|1|5|C|5054
7NFX|1|5|G|5055

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain d

eL31