IL_7NFX_194

3D structure

PDB id

7NFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NFX_194 not in the Motif Atlas

Geometric match to IL_4C7O_002

Geometric discrepancy: 0.3707

The information below is about IL_4C7O_002

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

7NFX|1|5|G|1074
7NFX|1|5|G|1075
7NFX|1|5|C|1076
*
7NFX|1|5|G|1235
7NFX|1|5|C|1236

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain E

60S ribosomal protein L6

Chain F

uL30