IL_7NFX_195

3D structure

PDB id

7NFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NFX_195 not in the Motif Atlas

Geometric match to IL_4LFB_038

Geometric discrepancy: 0.2893

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

7NFX|1|5|G|4095
7NFX|1|5|C|4096
7NFX|1|5|G|4097
*
7NFX|1|5|C|4112
7NFX|1|5|U|4113

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain G

60S ribosomal protein L7a

Chain g

60S ribosomal protein L34