IL_7NHK_005

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUU*AUUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHK_005 not in the Motif Atlas

Geometric match to IL_3TZR_003

Geometric discrepancy: 0.1618

The information below is about IL_3TZR_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

41

Unit IDs

7NHK|1|A|U|152
7NHK|1|A|U|153
7NHK|1|A|U|154
7NHK|1|A|U|155
*
7NHK|1|A|A|173
7NHK|1|A|U|174
7NHK|1|A|U|175
7NHK|1|A|A|176

Current chains

Chain A

23S rRNA

Nearby chains

Chain Z

50S ribosomal protein L28