IL_7NHK_007

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGAACUG*CUUAGUACC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHK_007 not in the Motif Atlas

Homologous match to IL_4WF9_008

Geometric discrepancy: 0.0907

The information below is about IL_4WF9_008

Detailed Annotation

9x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_93502.2

Basepair signature

cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7NHK|1|A|G|189
7NHK|1|A|A|190
7NHK|1|A|G|191
7NHK|1|A|A|192
7NHK|1|A|A|193
7NHK|1|A|C|194
7NHK|1|A|U|195
7NHK|1|A|G|196
*
7NHK|1|A|C|203
7NHK|1|A|U|204
7NHK|1|A|U|205
7NHK|1|A|A|206
7NHK|1|A|G|207
7NHK|1|A|U|208
7NHK|1|A|A|209
7NHK|1|A|C|210
7NHK|1|A|C|211

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain O

50S ribosomal protein L15

Chain Z

50S ribosomal protein L28