IL_7NHK_009

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AC*GGAU

Length

6 nucleotides

Bulged bases

7NHK|1|A|G|403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHK_009 not in the Motif Atlas

Geometric match to IL_7RQB_073

Geometric discrepancy: 0.2939

The information below is about IL_7RQB_073

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_88739.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

7NHK|1|A|A|304
7NHK|1|A|C|305
*
7NHK|1|A|G|402
7NHK|1|A|G|403
7NHK|1|A|A|404
7NHK|1|A|U|405

Current chains

Chain A

23S rRNA

Nearby chains