IL_7NHK_020

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7NHK|1|A|G|840, 7NHK|1|A|G|844

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHK_020 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.098

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7NHK|1|A|G|713
7NHK|1|A|A|714
7NHK|1|A|A|715
7NHK|1|A|A|716
7NHK|1|A|C|717
*
7NHK|1|A|G|838
7NHK|1|A|A|839
7NHK|1|A|G|840
7NHK|1|A|A|841
7NHK|1|A|U|842
7NHK|1|A|A|843
7NHK|1|A|G|844
7NHK|1|A|C|845

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L4

Chain O

50S ribosomal protein L15