IL_7NHK_035

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGG*UUAC

Length

7 nucleotides

Bulged bases

7NHK|1|A|A|936

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHK_035 not in the Motif Atlas

Geometric match to IL_2ET8_001

Geometric discrepancy: 0.2504

The information below is about IL_2ET8_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7NHK|1|A|G|920
7NHK|1|A|G|921
7NHK|1|A|G|922
*
7NHK|1|A|U|934
7NHK|1|A|U|935
7NHK|1|A|A|936
7NHK|1|A|C|937

Current chains

Chain A

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L16