IL_7NHK_049

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7NHK|1|A|U|1247

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHK_049 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1176

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

7NHK|1|A|C|1244
7NHK|1|A|G|1245
7NHK|1|A|U|1246
7NHK|1|A|U|1247
7NHK|1|A|G|1248
7NHK|1|A|A|1249
7NHK|1|A|A|1250
7NHK|1|A|G|1251
*
7NHK|1|A|U|1270
7NHK|1|A|G|1271
7NHK|1|A|G|1272
7NHK|1|A|A|1273
7NHK|1|A|G|1274

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L20