IL_7NHK_057

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAUG*CUAG

Length

9 nucleotides

Bulged bases

7NHK|1|A|U|1461

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHK_057 not in the Motif Atlas

Homologous match to IL_4WF9_054

Geometric discrepancy: 0.2381

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7NHK|1|A|C|1458
7NHK|1|A|A|1459
7NHK|1|A|A|1460
7NHK|1|A|U|1461
7NHK|1|A|G|1462
*
7NHK|1|A|C|1622
7NHK|1|A|U|1623
7NHK|1|A|A|1624
7NHK|1|A|G|1625

Current chains

Chain A

23S rRNA

Nearby chains