IL_7NHK_075

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHK_075 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.2089

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

7NHK|1|A|A|1869
7NHK|1|A|G|1870
7NHK|1|A|G|1871
7NHK|1|A|A|1872
7NHK|1|A|U|1873
*
7NHK|1|A|A|1895
7NHK|1|A|G|1896
7NHK|1|A|A|1897
7NHK|1|A|A|1898
7NHK|1|A|U|1899

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

ABC-F type ribosomal protection protein Lsa(A)