IL_7NHK_082

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

7NHK|1|A|A|2452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHK_082 not in the Motif Atlas

Homologous match to IL_7RQB_081

Geometric discrepancy: 0.1329

The information below is about IL_7RQB_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

7NHK|1|A|G|2083
7NHK|1|A|A|2084
*
7NHK|1|A|U|2451
7NHK|1|A|A|2452
7NHK|1|A|C|2453
7NHK|1|A|C|2454

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

ABC-F type ribosomal protection protein Lsa(A)

Chain G

50S ribosomal protein L2