IL_7NHK_088

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAG*CGCUGGUGGGAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHK_088 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.2437

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

7NHK|1|A|G|2137
7NHK|1|A|G|2138
7NHK|1|A|A|2139
7NHK|1|A|G|2140
*
7NHK|1|A|C|2174
7NHK|1|A|G|2175
7NHK|1|A|C|2176
7NHK|1|A|U|2177
7NHK|1|A|G|2178
7NHK|1|A|G|2179
7NHK|1|A|U|2180
7NHK|1|A|G|2181
7NHK|1|A|G|2182
7NHK|1|A|G|2183
7NHK|1|A|A|2184
7NHK|1|A|U|2185
7NHK|1|A|A|2186
7NHK|1|A|C|2187

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

ABC-F type ribosomal protection protein Lsa(A)

Chain F

50S ribosomal protein L1