IL_7NHK_128
3D structure
- PDB id
- 7NHK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAUUAG*CCACGAUG
- Length
- 14 nucleotides
- Bulged bases
- 7NHK|1|a|U|270, 7NHK|1|a|C|306
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NHK_128 not in the Motif Atlas
- Homologous match to IL_5J7L_014
- Geometric discrepancy: 0.1171
- The information below is about IL_5J7L_014
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.3
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7NHK|1|a|C|268
7NHK|1|a|A|269
7NHK|1|a|U|270
7NHK|1|a|U|271
7NHK|1|a|A|272
7NHK|1|a|G|273
*
7NHK|1|a|C|303
7NHK|1|a|C|304
7NHK|1|a|A|305
7NHK|1|a|C|306
7NHK|1|a|G|307
7NHK|1|a|A|308
7NHK|1|a|U|309
7NHK|1|a|G|310
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain m
- 30S ribosomal protein S12
- Chain r
- 30S ribosomal protein S17
Coloring options: