IL_7NHK_155

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

7NHK|1|a|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHK_155 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.1888

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7NHK|1|a|G|960
7NHK|1|a|C|961
7NHK|1|a|A|962
*
7NHK|1|a|U|1406
7NHK|1|a|U|1407
7NHK|1|a|C|1408
7NHK|1|a|C|1409
7NHK|1|a|C|1410

Current chains

Chain a

16S rRNA

Nearby chains

Chain D

Transfer RNA; tRNA

Chain h

30S ribosomal protein S7

Chain j

30S ribosomal protein S9