IL_7NHK_164

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUG*CACUC

Length

9 nucleotides

Bulged bases

7NHK|1|a|U|1153

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHK_164 not in the Motif Atlas

Homologous match to IL_6CZR_158

Geometric discrepancy: 0.2511

The information below is about IL_6CZR_158

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_40144.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

7NHK|1|a|G|1151
7NHK|1|a|U|1152
7NHK|1|a|U|1153
7NHK|1|a|G|1154
*
7NHK|1|a|C|1171
7NHK|1|a|A|1172
7NHK|1|a|C|1173
7NHK|1|a|U|1174
7NHK|1|a|C|1175

Current chains

Chain a

16S rRNA

Nearby chains

Chain j

30S ribosomal protein S9

Chain k

30S ribosomal protein S10