IL_7NHK_170

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHK_170 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1467

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.3

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7NHK|1|a|C|1329
7NHK|1|a|G|1330
7NHK|1|a|G|1331
7NHK|1|a|A|1332
7NHK|1|a|U|1333
7NHK|1|a|U|1334
*
7NHK|1|a|A|1355
7NHK|1|a|U|1356
7NHK|1|a|G|1357
7NHK|1|a|A|1358
7NHK|1|a|A|1359
7NHK|1|a|G|1360

Current chains

Chain a

16S rRNA

Nearby chains

Chain n

30S ribosomal protein S13