IL_7NHK_171

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

7NHK|1|a|C|1426, 7NHK|1|a|A|1530

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHK_171 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.1257

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

7NHK|1|a|C|1425
7NHK|1|a|C|1426
7NHK|1|a|G|1427
*
7NHK|1|a|C|1528
7NHK|1|a|A|1529
7NHK|1|a|A|1530
7NHK|1|a|G|1531

Current chains

Chain a

16S rRNA

Nearby chains

Chain D

Transfer RNA; tRNA

Chain b

RNA (5'-R(P*GP*GP*AP*GP*GP*UP*AP*UP*GP*AP*CP*AP*A)-3')