IL_7NHL_019

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7NHL|1|A|G|846, 7NHL|1|A|G|850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHL_019 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0864

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7NHL|1|A|G|719
7NHL|1|A|A|720
7NHL|1|A|A|721
7NHL|1|A|A|722
7NHL|1|A|C|723
*
7NHL|1|A|G|844
7NHL|1|A|A|845
7NHL|1|A|G|846
7NHL|1|A|A|847
7NHL|1|A|U|848
7NHL|1|A|A|849
7NHL|1|A|G|850
7NHL|1|A|C|851

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L4

Chain O

50S ribosomal protein L15