IL_7NHL_041

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCCAGACAA*UCGAG

Length

14 nucleotides

Bulged bases

7NHL|1|A|A|1090

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHL_041 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.1643

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

7NHL|1|A|C|1087
7NHL|1|A|C|1088
7NHL|1|A|C|1089
7NHL|1|A|A|1090
7NHL|1|A|G|1091
7NHL|1|A|A|1092
7NHL|1|A|C|1093
7NHL|1|A|A|1094
7NHL|1|A|A|1095
*
7NHL|1|A|U|1152
7NHL|1|A|C|1153
7NHL|1|A|G|1154
7NHL|1|A|A|1155
7NHL|1|A|G|1156

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L6