IL_7NHL_043

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGUGC*GCUC

Length

10 nucleotides

Bulged bases

7NHL|1|A|A|1132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHL_043 not in the Motif Atlas

Geometric match to IL_8CRE_467

Geometric discrepancy: 0.3738

The information below is about IL_8CRE_467

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.3

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

7NHL|1|A|G|1131
7NHL|1|A|A|1132
7NHL|1|A|G|1133
7NHL|1|A|U|1134
7NHL|1|A|G|1135
7NHL|1|A|C|1136
*
7NHL|1|A|G|1143
7NHL|1|A|C|1144
7NHL|1|A|U|1145
7NHL|1|A|C|1146

Current chains

Chain A

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L36

Chain K

50S ribosomal protein L6