Motif IL_25873.4 Version IL_25873.4 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-3 | 2-5 | 3-8 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9PN5_205 | 9PN5 | 0.7212 | 2 | B5 | SSU rRNA | U | 1272 | G | 1273 | A | 1275 | U | 1276 | G | 1277 | * | U | 1434 | A | 1436 | U | 1437 | G | 1438 | cWW | cWH | ncWS | cWW | cWWa | |
| 2 | IL_4LFB_068 | 4LFB | 0.0807 | 0 | A | SSU rRNA | G | 1497 | UR3 | 1498 | A | 1499 | A | 1500 | C | 1501 | * | G | 1401 | 4OC | 1402 | C | 1403 | 5MC | 1404 | cWW | cSH | cWS | cWW | cWW | |
| 3 | IL_8B0X_058 | 8B0X | 0.0596 | 0 | A | SSU rRNA | G | 1497 | UR3 | 1498 | A | 1499 | A | 1500 | C | 1501 | * | G | 1401 | 4OC | 1402 | C | 1403 | C | 1404 | cWW | cSH | cWS | cWW | cWW | |
| 4 | IL_9H3G_234 | 9H3G | 0.0632 | 0 | h1 | SSU rRNA | G | 1764 | U | 1765 | A | 1766 | 6MZ | 1767 | C | 1768 | * | G | 1640 | OMC | 1641 | C | 1642 | C | 1643 | cWW | cSH | cWS | cWW | cWW | |
| 5 | IL_9PN5_221 | 9PN5 | 0.0000 | 0 | B5 | SSU rRNA | G | 1760 | U | 1761 | A | 1762 | A | 1763 | C | 1764 | * | G | 1638 | C | 1639 | C | 1640 | C | 1641 | cWW | cSH | cWS | cWW | cWW | |
| 6 | IL_8GLP_275 | 8GLP | 0.0532 | 0 | S2 | SSU rRNA | G | 1829 | U | 1830 | A | 1831 | 6MZ | 1832 | C | 1833 | * | G | 1702 | OMC | 1703 | C | 1704 | C | 1705 | cWW | cSH | cWS | cWW | cWW | |
| 7 | IL_8CRE_467 | 8CRE | 0.0621 | 0 | CM | SSU rRNA | G | 1747 | U | 1748 | A | 1749 | A | 1750 | C | 1751 | * | G | 1625 | C | 1626 | C | 1627 | C | 1628 | cWW | cSH | ncWS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUA(6MZ)C*G(OMC)CC | 2 |
| GUAAC*GCCC | 2 |
| UGCAUG*UGAUG | 1 |
| G(UR3)AAC*G(4OC)C(5MC) | 1 |
| G(UR3)AAC*G(4OC)CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| (UR3)AA*(4OC)C | 2 |
| UA(6MZ)*(OMC)C | 2 |
| UAA*CC | 2 |
| GCAU*GAU | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Heat map statistics
- Min 0.05 | Avg 0.22 | Max 0.74
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