IL_7NHL_057

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

7NHL|1|A|U|1568

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHL_057 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.0974

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7NHL|1|A|U|1512
7NHL|1|A|A|1513
7NHL|1|A|A|1514
7NHL|1|A|G|1515
*
7NHL|1|A|U|1565
7NHL|1|A|G|1566
7NHL|1|A|A|1567
7NHL|1|A|U|1568
7NHL|1|A|G|1569

Current chains

Chain A

23S rRNA

Nearby chains