IL_7NHL_059

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*CGUUAAG

Length

9 nucleotides

Bulged bases

7NHL|1|A|U|1552

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHL_059 not in the Motif Atlas

Homologous match to IL_7RQB_061

Geometric discrepancy: 0.3084

The information below is about IL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52493.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

7NHL|1|A|U|1525
7NHL|1|A|G|1526
*
7NHL|1|A|C|1549
7NHL|1|A|G|1550
7NHL|1|A|U|1551
7NHL|1|A|U|1552
7NHL|1|A|A|1553
7NHL|1|A|A|1554
7NHL|1|A|G|1555

Current chains

Chain A

23S rRNA

Nearby chains