IL_7NHL_076

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAAUUCCUUG*CCCG

Length

16 nucleotides

Bulged bases

7NHL|1|A|A|1965, 7NHL|1|A|U|1971, 7NHL|1|A|C|1990

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHL_076 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1183

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.2

Basepair signature

cWW-L-tHH-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

9

Unit IDs

7NHL|1|A|C|1961
7NHL|1|A|G|1962
7NHL|1|A|A|1963
7NHL|1|A|A|1964
7NHL|1|A|A|1965
7NHL|1|A|U|1966
7NHL|1|A|U|1967
7NHL|1|A|C|1968
7NHL|1|A|C|1969
7NHL|1|A|U|1970
7NHL|1|A|U|1971
7NHL|1|A|G|1972
*
7NHL|1|A|C|1988
7NHL|1|A|C|1989
7NHL|1|A|C|1990
7NHL|1|A|G|1991

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

Lincosamide-streptogramin A resistance protein

Chain G

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA