IL_7NHL_085

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUACAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHL_085 not in the Motif Atlas

Geometric match to IL_3U4M_002

Geometric discrepancy: 0.2042

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

7NHL|1|A|G|2137
7NHL|1|A|U|2138
7NHL|1|A|A|2139
7NHL|1|A|C|2140
7NHL|1|A|A|2141
7NHL|1|A|G|2142
7NHL|1|A|G|2143
7NHL|1|A|A|2144
7NHL|1|A|U|2145
7NHL|1|A|A|2146
7NHL|1|A|G|2147
*
7NHL|1|A|C|2205
7NHL|1|A|C|2206

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

Lincosamide-streptogramin A resistance protein