IL_7NHL_087

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUUGAAA*UGGAG

Length

13 nucleotides

Bulged bases

7NHL|1|A|U|2159

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHL_087 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.2292

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

7NHL|1|A|C|2156
7NHL|1|A|U|2157
7NHL|1|A|U|2158
7NHL|1|A|U|2159
7NHL|1|A|G|2160
7NHL|1|A|A|2161
7NHL|1|A|A|2162
7NHL|1|A|A|2163
*
7NHL|1|A|U|2182
7NHL|1|A|G|2183
7NHL|1|A|G|2184
7NHL|1|A|A|2185
7NHL|1|A|G|2186

Current chains

Chain A

23S rRNA

Nearby chains