IL_7NHL_105

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUAC*GGUAG

Length

10 nucleotides

Bulged bases

7NHL|1|A|U|2716, 7NHL|1|A|A|2717

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHL_105 not in the Motif Atlas

Homologous match to IL_4WF9_102

Geometric discrepancy: 0.1168

The information below is about IL_4WF9_102

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

7NHL|1|A|U|2714
7NHL|1|A|G|2715
7NHL|1|A|U|2716
7NHL|1|A|A|2717
7NHL|1|A|C|2718
*
7NHL|1|A|G|2745
7NHL|1|A|G|2746
7NHL|1|A|U|2747
7NHL|1|A|A|2748
7NHL|1|A|G|2749

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L3

Chain Q

50S ribosomal protein L17

Chain S

50S ribosomal protein L19