IL_7NHL_127

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7NHL|1|a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHL_127 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1732

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7NHL|1|a|G|147
7NHL|1|a|G|148
7NHL|1|a|A|149
7NHL|1|a|U|150
7NHL|1|a|A|151
7NHL|1|a|A|152
7NHL|1|a|C|153
*
7NHL|1|a|G|168
7NHL|1|a|C|169
7NHL|1|a|U|170
7NHL|1|a|A|171
7NHL|1|a|A|172
7NHL|1|a|U|173
7NHL|1|a|A|174
7NHL|1|a|C|175

Current chains

Chain a

16S rRNA

Nearby chains

Chain u

30S ribosomal protein S20