IL_7NHL_130

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUUAG*CAACGAUG

Length

14 nucleotides

Bulged bases

7NHL|1|a|U|252, 7NHL|1|a|C|288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHL_130 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.1224

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.5

Basepair signature

cWW-cSS-tSS-L-cWW-tHW-cWW

Number of instances in this motif group

7

Unit IDs

7NHL|1|a|C|250
7NHL|1|a|A|251
7NHL|1|a|U|252
7NHL|1|a|U|253
7NHL|1|a|A|254
7NHL|1|a|G|255
*
7NHL|1|a|C|285
7NHL|1|a|A|286
7NHL|1|a|A|287
7NHL|1|a|C|288
7NHL|1|a|G|289
7NHL|1|a|A|290
7NHL|1|a|U|291
7NHL|1|a|G|292

Current chains

Chain a

16S rRNA

Nearby chains

Chain m

30S ribosomal protein S12

Chain r

30S ribosomal protein S17