IL_7NHL_175

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHL_175 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.0894

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7NHL|1|a|G|1412
7NHL|1|a|C|1413
7NHL|1|a|C|1414
7NHL|1|a|C|1415
*
7NHL|1|a|G|1509
7NHL|1|a|U|1510
7NHL|1|a|A|1511
7NHL|1|a|A|1512
7NHL|1|a|C|1513

Current chains

Chain a

16S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain D

Transfer RNA; tRNA

Chain b

RNA (5'-R(P*GP*GP*AP*GP*GP*UP*AP*UP*G)-3')