IL_7NHM_019

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7NHM|1|A|G|846, 7NHM|1|A|G|850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHM_019 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.0848

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7NHM|1|A|G|719
7NHM|1|A|A|720
7NHM|1|A|A|721
7NHM|1|A|A|722
7NHM|1|A|C|723
*
7NHM|1|A|G|844
7NHM|1|A|A|845
7NHM|1|A|G|846
7NHM|1|A|A|847
7NHM|1|A|U|848
7NHM|1|A|A|849
7NHM|1|A|G|850
7NHM|1|A|C|851

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L4

Chain O

50S ribosomal protein L15