IL_7NHM_022

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHM_022 not in the Motif Atlas

Homologous match to IL_7RQB_021

Geometric discrepancy: 0.1083

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

7NHM|1|A|U|748
7NHM|1|A|G|749
7NHM|1|A|A|750
7NHM|1|A|A|751
7NHM|1|A|G|752
*
7NHM|1|A|U|769
7NHM|1|A|G|770
7NHM|1|A|G|771
7NHM|1|A|A|772
7NHM|1|A|G|773

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2