IL_7NHM_073

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHM_073 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.1504

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra pair

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

7NHM|1|A|U|1878
7NHM|1|A|U|1879
7NHM|1|A|A|1880
7NHM|1|A|A|1881
7NHM|1|A|G|1882
*
7NHM|1|A|C|1914
7NHM|1|A|G|1915
7NHM|1|A|A|1916
7NHM|1|A|A|1917
7NHM|1|A|G|1918

Current chains

Chain A

23S rRNA

Nearby chains