IL_7NHM_099

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHM_099 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.1698

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7NHM|1|A|U|2679
7NHM|1|A|U|2680
7NHM|1|A|A|2681
7NHM|1|A|G|2682
7NHM|1|A|U|2683
7NHM|1|A|A|2684
7NHM|1|A|C|2685
*
7NHM|1|A|G|2690
7NHM|1|A|G|2691
7NHM|1|A|A|2692
7NHM|1|A|C|2693
7NHM|1|A|C|2694
7NHM|1|A|G|2695

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L6