IL_7NHM_124
3D structure
- PDB id
- 7NHM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUUAG*CAACGAUG
- Length
- 14 nucleotides
- Bulged bases (A, C, G, U)
- 252U, 288C
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NHM_124 not in the Motif Atlas
- Homologous match to IL_5J7L_014
- Geometric discrepancy: 0.1326
- The information below is about IL_5J7L_014
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.3
- Basepair signature
- cWW-tSS-L-tSH-L-R-R-cWW-L
- Number of instances in this motif group
- 18
Unit IDs
7NHM|1|a|C|250
7NHM|1|a|A|251
7NHM|1|a|U|252
7NHM|1|a|U|253
7NHM|1|a|A|254
7NHM|1|a|G|255
*
7NHM|1|a|C|285
7NHM|1|a|A|286
7NHM|1|a|A|287
7NHM|1|a|C|288
7NHM|1|a|G|289
7NHM|1|a|A|290
7NHM|1|a|U|291
7NHM|1|a|G|292
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain m
- 30S ribosomal protein S12
- Chain r
- 30S ribosomal protein S17
Coloring options: