IL_7NHM_135

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

7NHM|1|a|A|580

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHM_135 not in the Motif Atlas

Homologous match to IL_6CZR_134

Geometric discrepancy: 0.1273

The information below is about IL_6CZR_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.5

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

7NHM|1|a|C|577
7NHM|1|a|G|578
7NHM|1|a|U|579
7NHM|1|a|A|580
7NHM|1|a|A|581
7NHM|1|a|A|582
7NHM|1|a|G|583
*
7NHM|1|a|C|890
7NHM|1|a|G|891

Current chains

Chain a

16S rRNA

Nearby chains

Chain f

30S ribosomal protein S5

Chain m

30S ribosomal protein S12

Chain r

30S ribosomal protein S17