3D structure

PDB id
7NHM (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome from Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGAGUACG*UGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NHM_148 not in the Motif Atlas
Homologous match to IL_4LFB_034
Geometric discrepancy: 0.1054
The information below is about IL_4LFB_034
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

7NHM|1|a|G|897
7NHM|1|a|G|898
7NHM|1|a|A|899
7NHM|1|a|G|900
7NHM|1|a|U|901
7NHM|1|a|A|902
7NHM|1|a|C|903
7NHM|1|a|G|904
*
7NHM|1|a|U|915
7NHM|1|a|G|916
7NHM|1|a|A|917
7NHM|1|a|A|918
7NHM|1|a|A|919
7NHM|1|a|C|920

Current chains

Chain a
16S rRNA

Nearby chains

Chain m
30S ribosomal protein S12

Coloring options:


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