IL_7NHM_153

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHM_153 not in the Motif Atlas

Geometric match to IL_5J7L_043

Geometric discrepancy: 0.1626

The information below is about IL_5J7L_043

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7NHM|1|a|G|1003
7NHM|1|a|A|1004
7NHM|1|a|C|1005
7NHM|1|a|A|1006
7NHM|1|a|U|1007
*
7NHM|1|a|A|1056
7NHM|1|a|C|1057

Current chains

Chain a

16S rRNA

Nearby chains

Chain o

30S ribosomal protein S14 type Z