IL_7NHM_161

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUG*CACUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHM_161 not in the Motif Atlas

Homologous match to IL_6CZR_158

Geometric discrepancy: 0.2449

The information below is about IL_6CZR_158

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_40144.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

7NHM|1|a|G|1136
7NHM|1|a|U|1137
7NHM|1|a|U|1138
7NHM|1|a|G|1139
*
7NHM|1|a|C|1156
7NHM|1|a|A|1157
7NHM|1|a|C|1158
7NHM|1|a|U|1159
7NHM|1|a|C|1160

Current chains

Chain a

16S rRNA

Nearby chains

Chain j

30S ribosomal protein S9

Chain k

30S ribosomal protein S10