IL_7NHM_167

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHM_167 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1266

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7NHM|1|a|C|1314
7NHM|1|a|G|1315
7NHM|1|a|G|1316
7NHM|1|a|A|1317
7NHM|1|a|U|1318
7NHM|1|a|U|1319
*
7NHM|1|a|A|1340
7NHM|1|a|U|1341
7NHM|1|a|G|1342
7NHM|1|a|A|1343
7NHM|1|a|A|1344
7NHM|1|a|G|1345

Current chains

Chain a

16S rRNA

Nearby chains

Chain n

30S ribosomal protein S13