IL_7NHN_018

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7NHN|1|A|G|847, 7NHN|1|A|G|851

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHN_018 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.1063

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7NHN|1|A|G|720
7NHN|1|A|A|721
7NHN|1|A|A|722
7NHN|1|A|A|723
7NHN|1|A|C|724
*
7NHN|1|A|G|845
7NHN|1|A|A|846
7NHN|1|A|G|847
7NHN|1|A|A|848
7NHN|1|A|U|849
7NHN|1|A|A|850
7NHN|1|A|G|851
7NHN|1|A|C|852

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L4

Chain O

50S ribosomal protein L15